#!/bin/bash -l # scripts/hpc/install.sh # set -eo pipefail echo ">>> Starting HPC Installation in $(hostname)..." # Mirror configs to $VSC_DATA to avoid home quota limits (3GB) PROJ_NAME=$(basename "$PWD") HPC_CONFIG_DIR="$VSC_DATA/$PROJ_NAME/env/hpc" mkdir -p "$HPC_CONFIG_DIR" cp env/hpc/*.txt "$HPC_CONFIG_DIR/" module load vsc-venv echo ">>> Synchronizing and activating environment (vsc-venv)..." set +eo pipefail source vsc-venv --activate \ --modules "$HPC_CONFIG_DIR/modules.txt" \ --requirements "$HPC_CONFIG_DIR/requirements.txt" set -eo pipefail # Overlay specific NumPy/Protobuf versions to ensure venv precedence echo ">>> Applying library overlays (NumPy, Protobuf)..." pip install --upgrade --no-deps numpy protobuf echo '>>> Installing ipykernel...' CLUSTER_ID="${VSC_INSTITUTE_CLUSTER:-generic}" python -m ipykernel install --user --name="sel3_${CLUSTER_ID}" \ --display-name "SEL3 (${CLUSTER_ID})" echo '>>> Done'