chore(hpc): finalize hpc settings and scripts

- Update train.pbs to default to smoke test for safety
- Update .gitignore and ruff.toml
- Sync uv.lock (removing python 3.11 remnants)
- Refine smoke test config

.vscode/settings.json

@@ -0,0 +1,7 @@
+{
+    "python.testing.pytestArgs": [
+        "tests"
+    ],
+    "python.testing.unittestEnabled": false,
+    "python.testing.pytestEnabled": true
+}