From ae49c8167c81026d27387e839dff7f33f410a39b Mon Sep 17 00:00:00 2001
From: cedric <cedric00ik@gmail.com>
Date: Sun, 5 Apr 2026 10:26:19 +0000
Subject: [PATCH 1/3] fix: removed pr review section

---
 docs/HPC.md | 19 -------------------
 1 file changed, 19 deletions(-)

diff --git a/docs/HPC.md b/docs/HPC.md
index f33d512..ff18a5f 100644
--- a/docs/HPC.md
+++ b/docs/HPC.md
@@ -74,25 +74,6 @@ After installation, run these commands to ensure your environment is set up corr
    python -c "import torch, jax; print(f'GPU: {torch.cuda.is_available()}'); print(f'JAX: {jax.devices()}')"
    ```
 
-## PR Verification (Quick Start)
-
-If you are a reviewer verifying a PR, run this single block:
-
-```bash
-git checkout <pr-branch>
-module swap cluster/donphan
-qsub -I -l nodes=1:gpus=1
-
-# Inside the interactive session:
-cd "$PBS_O_WORKDIR"
-bash scripts/hpc/install.sh
-python -c "import torch, jax; print(torch.cuda.is_available()); print(jax.devices())"
-exit
-
-# Verify batch submission
-qsub scripts/hpc/train.pbs
-```
-
 ## Managing Dependencies
 
 `env/hpc/requirements.txt` is auto-generated from `pyproject.toml`. To regenerate:

From c1ba3900be88dd0c7709ab0d6608859481f524f9 Mon Sep 17 00:00:00 2001
From: cedric <cedric00ik@gmail.com>
Date: Sun, 5 Apr 2026 10:26:39 +0000
Subject: [PATCH 2/3] fix: restored propper logging

---
 scripts/hpc/train.pbs | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/scripts/hpc/train.pbs b/scripts/hpc/train.pbs
index a5d7a9d..3d53193 100644
--- a/scripts/hpc/train.pbs
+++ b/scripts/hpc/train.pbs
@@ -6,6 +6,8 @@
 #PBS -N brittlestar-ppo
 #PBS -l nodes=1:ppn=8
 #PBS -l walltime=24:00:00
+#PBS -o runs/brittlestar-ppo.o$PBS_JOBID
+#PBS -e runs/brittlestar-ppo.e$PBS_JOBID
 
 set -euo pipefail
 

From 473a120feb9674efe8f03e29e592df5e7da991da Mon Sep 17 00:00:00 2001
From: Tibo De Peuter <tibo.depeuter@ugent.be>
Date: Sun, 5 Apr 2026 12:32:02 +0200
Subject: [PATCH 3/3] fix(hpc): create runs dir on first run

---
 scripts/hpc/install.sh | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/scripts/hpc/install.sh b/scripts/hpc/install.sh
index 8a625a9..d1b69db 100644
--- a/scripts/hpc/install.sh
+++ b/scripts/hpc/install.sh
@@ -19,6 +19,8 @@ if [ -n "$PBS_O_WORKDIR" ]; then
     cd "$PBS_O_WORKDIR"
 fi
 
+mkdir "${PBS_O_WORKDIR}/runs"
+
 # Mirror configs to $VSC_DATA to avoid home quota limits (3GB)
 # vsc-venv manages environments relative to the requirements file
 PROJ_NAME=$(basename "$PWD")