From 51da258feb52aaf93ac5b8c0dbdee3d9e864119e Mon Sep 17 00:00:00 2001
From: Tibo De Peuter <tibo.depeuter@ugent.be>
Date: Sat, 4 Apr 2026 21:40:07 +0200
Subject: [PATCH] refactor(hpc): more verbose

---
 scripts/hpc/install.sh | 17 +++++++++++++++--
 1 file changed, 15 insertions(+), 2 deletions(-)

diff --git a/scripts/hpc/install.sh b/scripts/hpc/install.sh
index c1f2f22..dea8083 100644
--- a/scripts/hpc/install.sh
+++ b/scripts/hpc/install.sh
@@ -14,14 +14,27 @@ export PIP_CACHE_DIR="$VSC_SCRATCH/.cache/pip"
 export UV_CACHE_DIR="$VSC_SCRATCH/.cache/uv"
 mkdir -p "$PIP_CACHE_DIR" "$UV_CACHE_DIR"
 
+# Ensure we are in the project root
+if [ -n "$PBS_O_WORKDIR" ]; then
+    cd "$PBS_O_WORKDIR"
+fi
+
 module load vsc-venv
 
-echo 'Installing venv...'
+echo 'Synchronizing environment...'
+# Step 1: Sync (build/update) the environment
+vsc-venv \
+    --modules env/hpc/modules.txt \
+    --requirements env/hpc/requirements.txt
+
+echo 'Activating environment...'
+# Step 2: Activate the environment
 source vsc-venv --activate \
     --modules env/hpc/modules.txt \
     --requirements env/hpc/requirements.txt
 
-# Force upgrade shared system dependencies to ensure venv precedence
+# Step 3: Force upgrade shared system dependencies to ensure venv precedence
+echo 'Applying library overlays (NumPy, Protobuf)...'
 pip install --upgrade --no-deps numpy protobuf
 
 echo 'Installing ipykernel...'