Deployed e4869e0 with MkDocs version: 1.6.1

scripts/hpc/install.sh

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+#!/bin/bash -l
+# scripts/hpc/install.sh
+#
+# Usage (on any compute node):
+#   bash scripts/hpc/install.sh
+#
+# Batch usage:
+#   qsub scripts/hpc/install.sh
+
+#PBS -N brittlestar-install
+#PBS -l walltime=00:15:00
+
+set -euo pipefail
+
+# Preliminary status echo
+echo ">>> Starting installation job $PBS_JOBID on $(hostname)..."
+
+if [ -n "$PBS_O_WORKDIR" ]; then
+    cd "$PBS_O_WORKDIR"
+fi
+
+mkdir -p "${PBS_O_WORKDIR}/runs"
+
+# Mirror configs to $VSC_DATA to avoid home quota limits (3GB)
+# vsc-venv manages environments relative to the requirements file
+PROJ_NAME=$(basename "$PWD")
+HPC_CONFIG_DIR="$VSC_DATA/$PROJ_NAME/env/hpc"
+mkdir -p "$HPC_CONFIG_DIR"
+cp env/hpc/*.txt "$HPC_CONFIG_DIR/"
+
+# Keep caches off $VSC_HOME (quota ~3 GB).
+export PIP_CACHE_DIR="$VSC_SCRATCH/.cache/pip"
+export UV_CACHE_DIR="$VSC_SCRATCH/.cache/uv"
+mkdir -p "$PIP_CACHE_DIR" "$UV_CACHE_DIR"
+
+module load vsc-venv
+
+echo ">>> Synchronizing and activating environment (vsc-venv)..."
+# cd to $VSC_DATA so vsc-venv creates its venvs/ directory there, not in $HOME.
+mkdir -p "$VSC_DATA/$PROJ_NAME"
+cd "$VSC_DATA/$PROJ_NAME"
+set +euo pipefail
+source vsc-venv --activate \
+    --modules "$HPC_CONFIG_DIR/modules.txt" \
+    --requirements "$HPC_CONFIG_DIR/requirements.txt"
+set -euo pipefail
+cd "$PBS_O_WORKDIR"
+
+echo '>>> Installing ipykernel...'
+CLUSTER_ID="${VSC_INSTITUTE_CLUSTER:-generic}"
+python -m ipykernel install --user --name="sel3_${CLUSTER_ID}" \
+    --display-name "SEL3 (${CLUSTER_ID})"
+
+echo '>>> Done'