feat: Time+memory tracking
This commit is contained in:
parent
59722acf76
commit
ee4d94e157
GPG key ID:
38297DE43F75FFE2
7 changed files with 456 additions and 0 deletions
1
.gitignore
vendored
1
.gitignore
vendored
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@ -2,3 +2,4 @@ __pycache__
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.idea/
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data/
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saved_models/
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results/
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12
benchmark.py
Normal file
12
benchmark.py
Normal file
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@ -0,0 +1,12 @@
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from main import main
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from src.utils.benchmark import execute_benchmark
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from src.utils.benchmark_dataclasses import BenchmarkItem
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def benchmark():
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# Just calling `main` is the easiest way to allow all functionality
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execute_benchmark(benchmark_item=BenchmarkItem(task=main, arguments={}), results_dir="results")
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if __name__ == "__main__":
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benchmark()
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@ -11,7 +11,9 @@ dependencies = [
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[project.optional-dependencies]
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dev = [
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"hydra-core>=1.3.2",
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"matplotlib>=3.10.7",
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"memray>=1.19.1",
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"optuna==4.5.0",
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"torch==2.9.0",
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"torchdata==0.7.1",
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0
results/.keep
Normal file
0
results/.keep
Normal file
175
src/utils/benchmark.py
Normal file
175
src/utils/benchmark.py
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@ -0,0 +1,175 @@
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"""Utilities functions for benchmarking."""
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import json
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import string
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from concurrent.futures import ThreadPoolExecutor
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from logging import getLogger
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from os import getpid, path
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from pathlib import Path
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from random import choices
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from subprocess import DEVNULL, PIPE, CalledProcessError, TimeoutExpired, run
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from timeit import timeit
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from typing import Callable
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from memray import Tracker
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from ..utils.benchmark_dataclasses import BenchmarkItem, BenchmarkResult
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log = getLogger(__name__)
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def get_commit_hash() -> str:
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"""
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Get the commit hash of the current git repository.
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If not working in a git repository, return a random string that looks like a commit hash.
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"""
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try:
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return run(
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["git", "rev-parse", "--short", "HEAD"],
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check=True,
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stdout=PIPE,
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stderr=DEVNULL,
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text=True,
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).stdout.strip()
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except CalledProcessError as e:
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log.error(
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"Could not determine the commit hash. Are you using a git repository?:\n%s",
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e,
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)
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log.error("Using a random string as commit hash.")
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return "".join(choices(string.hexdigits[:-6], k=40))
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def init_stat_file(stat_file: Path, header: str) -> int:
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"""Initialize a statistics file with a header."""
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# Check if the parent directory exists
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stat_file.parent.mkdir(parents=True, exist_ok=True)
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# Check if the file exists
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if stat_file.exists():
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# Nothing left to do
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return 0
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# Initialize the file by writing the header to it.
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log.debug("Initializing statistics file %s", stat_file)
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stat_file.touch()
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stat_file.write_text(f"{header}\n", encoding="utf-8")
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return 1
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def track_time_memory(task: Callable, result: BenchmarkResult, mem_file: Path, mem_json_file: Path):
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"""Track the time and memory consumption of a task."""
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def task_with_result():
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result.value = task()
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# Measure memory consumption
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with Tracker(file_name=mem_file, native_traces=True, follow_fork=True, memory_interval_ms=1):
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try:
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# Measure runtime
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result.runtime = timeit(task_with_result, number=1, globals=globals())
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except BaseException as e:
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log.error("Error while timing the program:\n%s", e, exc_info=True)
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return None
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# Convert binary memory file into JSON.
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try:
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run(
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[
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"python",
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"-m",
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"memray",
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"stats",
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"--json",
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"--num-largest",
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"1",
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"--output",
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mem_json_file,
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mem_file,
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],
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check=True,
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timeout=100,
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stdout=DEVNULL,
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)
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# Parse JSON to get peak_memory
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mem_results = json.loads(mem_json_file.read_text(encoding="utf-8"))
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result.peak_memory = mem_results["metadata"]["peak_memory"]
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except CalledProcessError as e:
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log.error(
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"Something went wrong while processing the memray memory file %s:\n%s",
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mem_file,
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e,
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)
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except TimeoutExpired as e:
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log.error(
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"Timeout expired while processing the memray memory file %s:\n%s}",
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mem_file,
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e,
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)
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return result
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def execute_benchmark(
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benchmark_item: BenchmarkItem,
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results_dir: str | Path,
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timeout: int = 100,
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) -> BenchmarkResult:
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"""Execute a benchmark and track its runtime and peak memory consumption."""
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mem_file = Path(path.join(results_dir, f"memray-{benchmark_item.task.__name__}.mem"))
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mem_json_file = Path(path.join(results_dir, f"memray-{benchmark_item.task.__name__}.json"))
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result = BenchmarkResult(benchmark_item)
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try:
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# Time and track memory usage
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# Kill after timeout in seconds
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with ThreadPoolExecutor() as executor:
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future = executor.submit(
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lambda: track_time_memory(
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lambda: benchmark_item.task(**benchmark_item.arguments), result, mem_file, mem_json_file
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)
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)
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executed_result = future.result(timeout=timeout)
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if executed_result is not None:
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result = executed_result
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log.info(
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"PID %d: %s finished [%.6f seconds, %d bytes]",
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getpid(),
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benchmark_item.get_method(),
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result.runtime,
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result.peak_memory,
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)
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except TimeoutError:
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log.error("Timeout expired while running the benchmark_suite, cleaning up now.")
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log.info(
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"PID %d: %s failed after timeout (%d seconds)",
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getpid(),
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benchmark_item.get_method(),
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timeout,
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)
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finally:
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# Clean up memory dump file to save disk space.
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mem_file.unlink()
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return result
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if __name__ == "__main__":
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import hydra
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# Dummy example, read the contents of the dataset
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def _read_contents(filename):
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with open(filename, encoding="utf-8") as f:
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log.info("Dataset content: %s", f.read())
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def _read_contents_wrapper(cfg):
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return _read_contents(cfg.dataset.path)
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hydra_wrapped = hydra.main(config_path="../../config", config_name="config", version_base="1.2")(
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_read_contents_wrapper
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)()
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79
src/utils/benchmark_dataclasses.py
Normal file
79
src/utils/benchmark_dataclasses.py
Normal file
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@ -0,0 +1,79 @@
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"""
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Benchmark data classes.
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This module contains the BenchmarkResult class which is used to store and print the results of a
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benchmark_suite.
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"""
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from dataclasses import dataclass
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from typing import Any, Callable
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@dataclass(init=True)
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class BenchmarkItem:
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"""A class used to represent a benchmark_suite (iteration)."""
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task: Callable
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arguments: dict
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def __str__(self) -> str:
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"""String representation of the BenchmarkItem object."""
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return self.get_in_data_format()
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def get_method(self) -> str:
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"""
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Format the method as if it were a function call.
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"""
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method_name = self.task.__name__
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arguments = ", ".join(
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f'{key}={str(value)[:15]}'
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for key, value in self.arguments.items()
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)
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return f"{method_name}({arguments})"
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def get_in_data_format(self) -> str:
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"""
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Format the benchmark_suite item to be printed to a .dat file.
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"""
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# Flatten out arguments
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values = list(self.__dict__.values())
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values[1:2] = values[1].values()
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return " ".join(map(str, values))
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def get_header(self) -> str:
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"""
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Returns the header which is just the names of the fields separated by spaces.
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"""
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return " ".join(self.__dict__.keys())
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@dataclass(init=True)
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class BenchmarkResult:
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"""A class used to represent the result of a benchmark_suite."""
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benchmark_item: BenchmarkItem
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runtime: float = 0
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peak_memory: int = 0
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value: Any = None
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def __str__(self) -> str:
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"""String representation of the BenchmarkResult object."""
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return self.get_in_data_format()
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def get_in_data_format(self) -> str:
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"""
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Format the benchmark_suite result to be printed to a .dat file.
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"""
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return " ".join(map(str, self.__dict__.values()))
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def get_header(self) -> str:
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"""
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Returns the header which is just the names of the fields separated by spaces.
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"""
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# Get header of the BenchmarkItem
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keys = list(self.__annotations__.keys())
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keys[0:1] = self.benchmark_item.__annotations__.keys()
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keys[1:2] = self.benchmark_item.arguments.keys()
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return " ".join(keys)
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187
uv.lock
generated
187
uv.lock
generated
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@ -144,6 +144,12 @@ wheels = [
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{ url = "https://files.pythonhosted.org/packages/ba/88/6237e97e3385b57b5f1528647addea5cc03d4d65d5979ab24327d41fb00d/alembic-1.17.2-py3-none-any.whl", hash = "sha256:f483dd1fe93f6c5d49217055e4d15b905b425b6af906746abb35b69c1996c4e6", size = 248554, upload-time = "2025-11-14T20:35:05.699Z" },
|
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]
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[[package]]
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||||
name = "antlr4-python3-runtime"
|
||||
version = "4.9.3"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/3e/38/7859ff46355f76f8d19459005ca000b6e7012f2f1ca597746cbcd1fbfe5e/antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b", size = 117034, upload-time = "2021-11-06T17:52:23.524Z" }
|
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|
||||
[[package]]
|
||||
name = "anyio"
|
||||
version = "4.12.0"
|
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|
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@ -720,6 +726,20 @@ wheels = [
|
|||
{ url = "https://files.pythonhosted.org/packages/c2/3c/168062db8c0068315ed3f137db450869eb14d98f00144234c118f294b461/huggingface_hub-1.1.6-py3-none-any.whl", hash = "sha256:09726c4fc4c0dc5d83568234daff1ccb815c39b310784359c9d8b5906f679de2", size = 516110, upload-time = "2025-11-28T10:23:33.63Z" },
|
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]
|
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|
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[[package]]
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name = "hydra-core"
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version = "1.3.2"
|
||||
source = { registry = "https://pypi.org/simple" }
|
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dependencies = [
|
||||
{ name = "antlr4-python3-runtime" },
|
||||
{ name = "omegaconf" },
|
||||
{ name = "packaging" },
|
||||
]
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/6d/8e/07e42bc434a847154083b315779b0a81d567154504624e181caf2c71cd98/hydra-core-1.3.2.tar.gz", hash = "sha256:8a878ed67216997c3e9d88a8e72e7b4767e81af37afb4ea3334b269a4390a824", size = 3263494, upload-time = "2023-02-23T18:33:43.03Z" }
|
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wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/c6/50/e0edd38dcd63fb26a8547f13d28f7a008bc4a3fd4eb4ff030673f22ad41a/hydra_core-1.3.2-py3-none-any.whl", hash = "sha256:fa0238a9e31df3373b35b0bfb672c34cc92718d21f81311d8996a16de1141d8b", size = 154547, upload-time = "2023-02-23T18:33:40.801Z" },
|
||||
]
|
||||
|
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[[package]]
|
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name = "idna"
|
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version = "3.11"
|
||||
|
|
@ -831,6 +851,18 @@ wheels = [
|
|||
{ url = "https://files.pythonhosted.org/packages/da/e9/0d4add7873a73e462aeb45c036a2dead2562b825aa46ba326727b3f31016/kiwisolver-1.4.9-pp311-pypy311_pp73-win_amd64.whl", hash = "sha256:fb940820c63a9590d31d88b815e7a3aa5915cad3ce735ab45f0c730b39547de1", size = 73929, upload-time = "2025-08-10T21:27:48.236Z" },
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||||
]
|
||||
|
||||
[[package]]
|
||||
name = "linkify-it-py"
|
||||
version = "2.0.3"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
dependencies = [
|
||||
{ name = "uc-micro-py" },
|
||||
]
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/2a/ae/bb56c6828e4797ba5a4821eec7c43b8bf40f69cda4d4f5f8c8a2810ec96a/linkify-it-py-2.0.3.tar.gz", hash = "sha256:68cda27e162e9215c17d786649d1da0021a451bdc436ef9e0fa0ba5234b9b048", size = 27946, upload-time = "2024-02-04T14:48:04.179Z" }
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||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/04/1e/b832de447dee8b582cac175871d2f6c3d5077cc56d5575cadba1fd1cccfa/linkify_it_py-2.0.3-py3-none-any.whl", hash = "sha256:6bcbc417b0ac14323382aef5c5192c0075bf8a9d6b41820a2b66371eac6b6d79", size = 19820, upload-time = "2024-02-04T14:48:02.496Z" },
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||||
]
|
||||
|
||||
[[package]]
|
||||
name = "lorem"
|
||||
version = "0.1.1"
|
||||
|
|
@ -852,6 +884,23 @@ wheels = [
|
|||
{ url = "https://files.pythonhosted.org/packages/87/fb/99f81ac72ae23375f22b7afdb7642aba97c00a713c217124420147681a2f/mako-1.3.10-py3-none-any.whl", hash = "sha256:baef24a52fc4fc514a0887ac600f9f1cff3d82c61d4d700a1fa84d597b88db59", size = 78509, upload-time = "2025-04-10T12:50:53.297Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "markdown-it-py"
|
||||
version = "4.0.0"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
dependencies = [
|
||||
{ name = "mdurl" },
|
||||
]
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/5b/f5/4ec618ed16cc4f8fb3b701563655a69816155e79e24a17b651541804721d/markdown_it_py-4.0.0.tar.gz", hash = "sha256:cb0a2b4aa34f932c007117b194e945bd74e0ec24133ceb5bac59009cda1cb9f3", size = 73070, upload-time = "2025-08-11T12:57:52.854Z" }
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||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/94/54/e7d793b573f298e1c9013b8c4dade17d481164aa517d1d7148619c2cedbf/markdown_it_py-4.0.0-py3-none-any.whl", hash = "sha256:87327c59b172c5011896038353a81343b6754500a08cd7a4973bb48c6d578147", size = 87321, upload-time = "2025-08-11T12:57:51.923Z" },
|
||||
]
|
||||
|
||||
[package.optional-dependencies]
|
||||
linkify = [
|
||||
{ name = "linkify-it-py" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "markupsafe"
|
||||
version = "3.0.3"
|
||||
|
|
@ -990,6 +1039,70 @@ wheels = [
|
|||
{ url = "https://files.pythonhosted.org/packages/9a/cc/3fe688ff1355010937713164caacf9ed443675ac48a997bab6ed23b3f7c0/matplotlib-3.10.7-pp311-pypy311_pp73-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:3886e47f64611046bc1db523a09dd0a0a6bed6081e6f90e13806dd1d1d1b5e91", size = 8693919, upload-time = "2025-10-09T00:27:58.41Z" },
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]
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|
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[[package]]
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name = "mdit-py-plugins"
|
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version = "0.5.0"
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source = { registry = "https://pypi.org/simple" }
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dependencies = [
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{ name = "markdown-it-py" },
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]
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sdist = { url = "https://files.pythonhosted.org/packages/b2/fd/a756d36c0bfba5f6e39a1cdbdbfdd448dc02692467d83816dff4592a1ebc/mdit_py_plugins-0.5.0.tar.gz", hash = "sha256:f4918cb50119f50446560513a8e311d574ff6aaed72606ddae6d35716fe809c6", size = 44655, upload-time = "2025-08-11T07:25:49.083Z" }
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||||
wheels = [
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||||
{ url = "https://files.pythonhosted.org/packages/fb/86/dd6e5db36df29e76c7a7699123569a4a18c1623ce68d826ed96c62643cae/mdit_py_plugins-0.5.0-py3-none-any.whl", hash = "sha256:07a08422fc1936a5d26d146759e9155ea466e842f5ab2f7d2266dd084c8dab1f", size = 57205, upload-time = "2025-08-11T07:25:47.597Z" },
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||||
]
|
||||
|
||||
[[package]]
|
||||
name = "mdurl"
|
||||
version = "0.1.2"
|
||||
source = { registry = "https://pypi.org/simple" }
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||||
source = { registry = "https://pypi.org/simple" }
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/b0/77/a5b8c569bf593b0140bde72ea885a803b82086995367bf2037de0159d924/pygments-2.19.2.tar.gz", hash = "sha256:636cb2477cec7f8952536970bc533bc43743542f70392ae026374600add5b887", size = 4968631, upload-time = "2025-06-21T13:39:12.283Z" }
|
||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/c7/21/705964c7812476f378728bdf590ca4b771ec72385c533964653c68e86bdc/pygments-2.19.2-py3-none-any.whl", hash = "sha256:86540386c03d588bb81d44bc3928634ff26449851e99741617ecb9037ee5ec0b", size = 1225217, upload-time = "2025-06-21T13:39:07.939Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "pyparsing"
|
||||
version = "3.2.5"
|
||||
|
|
@ -1807,6 +1955,19 @@ wheels = [
|
|||
{ url = "https://files.pythonhosted.org/packages/1e/db/4254e3eabe8020b458f1a747140d32277ec7a271daf1d235b70dc0b4e6e3/requests-2.32.5-py3-none-any.whl", hash = "sha256:2462f94637a34fd532264295e186976db0f5d453d1cdd31473c85a6a161affb6", size = 64738, upload-time = "2025-08-18T20:46:00.542Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "rich"
|
||||
version = "14.2.0"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
dependencies = [
|
||||
{ name = "markdown-it-py" },
|
||||
{ name = "pygments" },
|
||||
]
|
||||
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|
||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/25/7a/b0178788f8dc6cafce37a212c99565fa1fe7872c70c6c9c1e1a372d9d88f/rich-14.2.0-py3-none-any.whl", hash = "sha256:76bc51fe2e57d2b1be1f96c524b890b816e334ab4c1e45888799bfaab0021edd", size = 243393, upload-time = "2025-10-09T14:16:51.245Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "setuptools"
|
||||
version = "80.9.0"
|
||||
|
|
@ -1883,6 +2044,23 @@ wheels = [
|
|||
{ url = "https://files.pythonhosted.org/packages/a2/09/77d55d46fd61b4a135c444fc97158ef34a095e5681d0a6c10b75bf356191/sympy-1.14.0-py3-none-any.whl", hash = "sha256:e091cc3e99d2141a0ba2847328f5479b05d94a6635cb96148ccb3f34671bd8f5", size = 6299353, upload-time = "2025-04-27T18:04:59.103Z" },
|
||||
]
|
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|
||||
[[package]]
|
||||
name = "textual"
|
||||
version = "6.8.0"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
dependencies = [
|
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{ name = "markdown-it-py", extra = ["linkify"] },
|
||||
{ name = "mdit-py-plugins" },
|
||||
{ name = "platformdirs" },
|
||||
{ name = "pygments" },
|
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{ name = "rich" },
|
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{ name = "typing-extensions" },
|
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]
|
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sdist = { url = "https://files.pythonhosted.org/packages/c8/8f/aeccf7459e3d71cbca912a27a97f1fcb00735326f90714d22fa540d3848e/textual-6.8.0.tar.gz", hash = "sha256:7efe618ec9197466b8fe536aefabb678edf30658b9dc58a763365d7daed12b62", size = 1581639, upload-time = "2025-12-07T17:53:46.681Z" }
|
||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/47/34/4f1bad936ac3ad94c8576b15660d4ce434f7dbd372baa53566a490bcdce3/textual-6.8.0-py3-none-any.whl", hash = "sha256:074d389ba8c6c98c74e2a4fe1493ea3a38f3ee5008697e98f71daa2cf8ab8fda", size = 714378, upload-time = "2025-12-07T17:53:44.501Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "torch"
|
||||
version = "2.9.0"
|
||||
|
|
@ -2048,6 +2226,15 @@ wheels = [
|
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{ url = "https://files.pythonhosted.org/packages/5c/23/c7abc0ca0a1526a0774eca151daeb8de62ec457e77262b66b359c3c7679e/tzdata-2025.2-py2.py3-none-any.whl", hash = "sha256:1a403fada01ff9221ca8044d701868fa132215d84beb92242d9acd2147f667a8", size = 347839, upload-time = "2025-03-23T13:54:41.845Z" },
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]
|
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|
||||
[[package]]
|
||||
name = "uc-micro-py"
|
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version = "1.0.3"
|
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source = { registry = "https://pypi.org/simple" }
|
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sdist = { url = "https://files.pythonhosted.org/packages/91/7a/146a99696aee0609e3712f2b44c6274566bc368dfe8375191278045186b8/uc-micro-py-1.0.3.tar.gz", hash = "sha256:d321b92cff673ec58027c04015fcaa8bb1e005478643ff4a500882eaab88c48a", size = 6043, upload-time = "2024-02-09T16:52:01.654Z" }
|
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wheels = [
|
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{ url = "https://files.pythonhosted.org/packages/37/87/1f677586e8ac487e29672e4b17455758fce261de06a0d086167bb760361a/uc_micro_py-1.0.3-py3-none-any.whl", hash = "sha256:db1dffff340817673d7b466ec86114a9dc0e9d4d9b5ba229d9d60e5c12600cd5", size = 6229, upload-time = "2024-02-09T16:52:00.371Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "urllib3"
|
||||
version = "2.5.0"
|
||||
|
|
|
|||
Reference in a new issue